Salk Institute for Biological Studies *
SalkCoresCCMI Center for Cytometry and Molecular Imaging
 
 

LSR II troubleshooting

Neither cytometer nor computer will not turn on.
Make sure that UPS under bench is turned on.
Can't log in to computer.
Make sure you are logging on to the CCMI domain.
Make sure you put in the correct user name and password.
Computer will not connect to cytometer.
Restart Diva software.
Computer STILL will not connect to cytometer.
Restart Diva hardware: Open the "Cytometer Status" application (the red telephone on the Windows desktop) and press the Enter key a few times. If you get a prompt such as "-->", type "reboot" and press Enter. If this fails, cycle the power to the cytometer.
No PE signal.
Ensure the 561 nm laser is turned on.
No events.
Laser(s) not turned on.
Fluidics control not set to "RUN".
Tube is cracked.
Check level in sheath tank.
Ensure that sheath tank lid is fitted properly.
Stuck fluidics - PRIME.
No cells in sample.
Clumpy sample - filter it.
Blocked SIP or flow cell - Remove sample, and press PRIME.
Waste not venting - check waste line for flow.
Air bubbles in sheath filter - purge filter.
Sample runs for a few seconds then stops
Clumpy sample - filter it.
Blocked SIP or flow cell - PRIME.
Waste not venting - check waste line.
Air bubbles in sheath filter - purge filter.
Very slow sample rate.
Sample very dilute.
Fluidics set to LOW.
Fluidics fine control turned down.
Sample still will not run
Air bubbles in sheath filter - purge filter.
SIP blocked - Set fluidics to "HIGH". Run 100% bleach for 30 sec. followed by at least 2 changes of DI water for 1 minute.